You're doing a
$ftp->cwd($directory) at the beginning, and then in your loop, you're looking in
"$directory/$_", which means you're looking at
/data/data/<filename>, instead of
/data/<filename>, are you sure that was what you meant to do?
My guess is that you want to remove the first $ftp->cwd($directory). And maybe check if that @lines1 and the loop following it actually contain/do anything.
C.
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