According to the original code there are six diferent instances which go to the same counters. Of course this is no problem, as you can combine the counters after the solution provided by Abigail-II like this:

$counts{tt} += $counts{aa};
$counts{ag} += $counts{ct};
$counts{ac} += $counts{gt};
$counts{tg} += $counts{ca};
$counts{ga} += $counts{tc};
$counts{cc} += $counts{gg};

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In reply to Re: Re: how can I speed up this perl?? by moxliukas
in thread how can I speed up this perl?? by Anonymous Monk

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