If you want clean output text, with proper newlines for your OS at the end of each line, instead of that weird dangling
^M (which tells me that perhaps the file isn't native to that OS, and/or was not properly transferred via ASCII when it was FTP'd?), a simple regular expression (or perhaps even something simpler like
chomp or
chop) might do the job for you:
s/\s*$/\n/s; # assuming \s will catch your newline
s/\s*[\r\n]+$/\n/; # otherwise, this should do it
Or, if you just want to use
substr:
substr($_, -2, 2) = undef; # deletes last 2 characters
substr($_, -3, 3) = "\n"; # if your string ends in a newline
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