Actually, subversion can be used for this task. Just store the permissions as properties. This also allows you to store ACLs, have version control (and check-in notes) on the permission changes, etc, etc...
A useful resource would probably be the various API bindings. From this you can use the check-in/check-out hooks to do something like:
use SVN::Client;
my $svn = new SVN::Client();
$svn->propset("acl:joe", "rw", $target, 0, 0);
# Where $target is the local (checked out) copy
NB. The SVN perl bindings are NOT in CPAN. You need to get them along with subversion. (Discussion)
If anyone needs me I'll be in the Angry Dome.
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