There doesn't seem to be a trivial way to do this.
I think you may need to decide how you're going to bond the two molecules, then create a new molecule, looping over the atoms and bonds in the source molecules and adding them to the new one.
I bet such a routine would be a useful addition to the Chemistry modules...
In reply to Re: Combining two molecules with the perl chemistry modules
by simonm
in thread Combining two molecules with the perl chemistry modules
by freak
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