I have alittle program that try to connect to a database with this f... module and structure called Bio::DB::GFF.
#!/usr/bin/perl use strict; use Bio::DB::GFF; my $db = Bio::DB::GFF->new(-user => 'bio', -pass => 'bio', -dsn => 'elegans', -aggregators => 'gene_model{coding_exon,5_ +UTR,3_UTR/CDS}'); my $gene_stream = $db->get_seq_stream('gene_model:curated'); while (my $gene = $gene_stream->next_seq) { print $gene->name,"\n"; for my $part ($gene->get_SeqFeatures) { print "\t",join("\t",$part->method,$part->start,$part->end),"\n"; } print "\n"; }

When I execute it, i have this error:
2L52.1 ------------- EXCEPTION Bio::Root::NotImplemented ------------- MSG: Abstract method "Bio::FeatureHolderI::get_SeqFeatures" is not imp +lemented by package Bio::DB::GFF::Feature. This is not your fault - author of Bio::DB::GFF::Feature should be bla +med!

Any Idea / suggestion monks?

In reply to BioPerl Question by tucano

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