If you're unconcerned with their balancing except for the outer ones,
$_ = '111(22(33)44)55';
my $re = qr/
(.*?) # minimal grab up to the first...
\( # literal left paren
.* # greedy skip everything up through...
\) # the last literal right paren
(.*)$ # then grab everything remaining
/x;
s/$re/$1$2/;
print;
If they do balance, it works, too. What do you want to happen if they don't balance?
Update: Typo repaired, thanks, Hofmator.
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