You have already gotten the answers you need, but let me point out one more issue that might cause trouble. You code says:
$system1 = <STDIN>; # this is manual input from the keyboard
#...
$system1 =~ s/\W.*//; # what if input was " box1" (initial space)?
#...
You could simplify this as follows:
( $system1 = <STDIN> ) =~ s/^\W*(\w+).*/$1/s;
(By including the "s" modifier on the substitution, you don't need to do "chomp", because the ".*" will match the final new-line.)
But personally, I always prefer to get this sort of user input from the command line, via @ARGV. Programs that start up, then pause, print a prompt and wait until something gets typed at the keyboard are such a pain.
my %systems = ( box1 => 1, box2 => 2 );
my $Usage = "Usage: $0 (" . join('|', sort keys %systems) . ")\n";
die $Usage unless ( @ARGV == 1 and $systems{$ARGV[0]} );
$system1 = lc( shift );
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