If you are using the regex first on "thisquery=select \\",
then on " table1.column1, \\", then on " table1.column2, \\", etc., it will never match because it never sees both "select" and "table1.column3".
Try:
perl -pi -we '/select/ .. s/table1\.column3/DUMMY_ID/'
which will do the substitution for the first table1.column3 found on or after each select line.
Also, \1, \2, etc. are better written as $1, $2, etc. on the right side of a substitution., as you would have been told if you'd enabled warnings.
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