hi guys. i am amateur in perl, i need ur help in solving one of my assignment In my program i have to call a fasta program using my perl script, after getting a output file of fasta parse thru it and store the best matching sequence above a cut off point one at a time in a temp file now use this temp file as a input ot fasta exe and run the same process again and get the output file now compare the original and the new fasta file. if you have any additional sequences in the new fasta output file append it to the original file, repeat the process till all the best sequence match above cut off is inputted to the fasta and you have the exhaustive homologous match The input of 2nd phase to fasta is extracted from the output of the 1st fasta program

In reply to Fasta Using Perl by FarTech

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