Another way is to use map on the original array and set all the entries which you don't want to '', and filter those out lateron..
my @set = qw (AAAAAT ATCGAT TTTTTG GCCCCC GTGGGG); my $lim = 0.75; my $len = length $set[0]; print "BEFORE:",scalar(@set),"\n"; map { ( ((tr/A//)/$len < $lim) && ((tr/T//)/$len < $lim) && ((tr/C//)/$len < $lim) && ((tr/G//)/$len < $lim) ) or $_ = '' } @set; print "AFTER:",scalar(@set),"\n";
Now the @set contains:
$VAR1 = ''; $VAR2 = 'ATCGAT'; $VAR3 = ''; $VAR4 = ''; $VAR5 = '';

.:| If it can't be fixed .. Don't break it |:.


In reply to Re^2: Removing Poly-ATCG from and Array of Strings by aukjan
in thread Removing Poly-ATCG from and Array of Strings by monkfan

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