In reply to the previous node........

Ok,

I get the data from either command line or WebPage.
The first script gets the data and passes the information to the next script.
This is not the only script though. Im trying to modulise the processes so that it wont be just the second sript here, but at least two.
Im just trying to get this first part going so i can add the other scripts to the second stage.

At the second stage, dependant on what was entered, either a sequence or two files, the Startup.cgi script will call BlastTool.cgi to run with the two files or run_Remote_Blast.cgi to run with the sequence.

BlastTool.cgi will then execute a series of other modules that filter results, parse the files data, email data, or a host of other things.

run_Remote_Blast.cgi will send the sequence to the BLAST web facilities and then return a file, ready for execution with BlastTool.cgi and its filtering and email functions.

Hows that....

UPDATE: in total there are around 5 scripts called from BlastTool.cgi. I am also going to implement some output to command line so the user can get output that way, need for a six script.

In reply to Re: Executing one script with another by MonkPaul
in thread Executing one script with another by MonkPaul

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