I suppose that is one option.
But i have a load of other modules to call from within the BlastTool.cgi script.
I was just trying to do this to try and learn how to execute another script really so i know personally what i am doing in the long run.
Over all i have
ComLine.pm
MergeFiles.pm
parseFiles.pm
Email.pm
Filter.pm
FilterHeader.cgi
runBlast.cgi
I was just trying to get the first script to be an input one, then actually perform the tasks after the input has been gathered.
I have really ballsed up the writing of this code as its currently all in one cgi file with separate functions, so i am in the process of trying to split it all up and get it to work properly from within different modules. Im ok with calling the modules from within the BlastToolcgi, but i just wanted to get the input in a separate script and possibly implement a loading page too.
Argggggggghhhhhhh, what have i done!!
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