Is it not your path to the files? If I look at your file structure and the location of the files the path should be different. Also if you print your scalars you would notice that the $file_sec comes back different then expected. In your case it would result in:
$file: "/files/data.pri"
$file_sec: "/files/files/data.sec"
This should do what you want:
# mycode.pl
my $file = "files/data.pri";
my $name = (split(/\./,$file))[0];
my $file_sec = "$name.sec";
prints now:
$file: "file/data.pri"
$file_sec: "file/data.sec"
hope this helps,
Critter
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