tr/y is the transliteration operator, and only works on single characters. It does not use a Perl "list" per se, but you give it a bunch of characters, so it can be said to be a 'list' in the common sense.
Since it only works on single characters, you won't be able to get the one -> two-character mappings like that using it. You'll have to resort to something like this:
my %MAP = (
"\xE4" => 'ae',
"\xE9" => 'e',
"\xF6" => 'oe',
"\xFC" => 'ue',
);
my $mapfrom = join('|', map { quotemeta } keys %MAP);
s/($mapfrom)/$MAP{$1}/eg;
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