The data are not constructed but actual. The reason why the same offset is seen in strings with a match is because these are biological data. The string are in essence biological "computer programs" coding for objects having almost exactly the same function. In a way my problem is similar to that in Perl Quiz of the Week #14, except I'm looking for identical code in different biological "programs".

I like your time estimates. I will definitely try your program.

In reply to Re^6: Search for identical substrings by bioMan
in thread Search for identical substrings by bioMan

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