If you change your loop to something like this is should work:
my $iname;
while(<LST>)
{
$iname=$1, next if /port-channel (\d+)/;
next if !defined $iname;
$hash->{$iname}->{$1} = $2
if (/switchport description To (\w+) ([\d\.]+)/);
$Rec2->{$iname}->{$1} = $2
if (m|(fc\d+/\d+)\s+\[(\w+)\]|);
}
Note, there is one small difference with the results you got from your code. Im sure you can see it, and fix it if its important:-)
gc
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