Hi,
I usually run this piece code of mine under console shell as follows:
$ perl mycode.pl filename > ~/MyPerl/result_ans/filename.out
Now, I want to run this command again but within a Perl code, using Shell module. Here is the snippet of how I do it:
perl("mycode.pl filename > ~/MyPerl/result_ans/filename.out");
But this doesn't work. Why?
The full context of what I am trying to do is shown in the following complete script:
use Shell; use Proc::Queue size=>5, qw(run_back); my @list = glob("*.fasta"); foreach my $list (@list) { run_back { run_code($list) } } sub run_code { my $fname = shift; my $base = ( split( /\./, $fname ) )[0]; perl("mycode.pl $base > ~/MyPerl/result_ans/$base.out"); # Tried this too, but still doesn't work # system("perl mycode.pl $base > ~/MyPerl/result_ans/$base.out"); return ; } 1 while wait != -1;


What I am trying to do above is to run the script in paralel process across the globbed files.
Can anybody advice how can I go about this correctly?

Update: Parallel::ForkManager version of the above code also doesn't work.
use Parallel::ForkManager; use Shell; my @list = glob("*.fasta"); my $pm = new Parallel::ForkManager(10); foreach my $list (@list) { my $pid = $pm->start and next; my $base = ( split( /\./, $list) )[0]; system("perl mycode.pl $base > ~/MyPerl/result_ans/$base.out"); $pm->finish; # Terminates the child process }

Regards,
Edward

In reply to Running a Perl Code within a Perl Code Using "Shell Module" by monkfan

Title:
Use:  <p> text here (a paragraph) </p>
and:  <code> code here </code>
to format your post, it's "PerlMonks-approved HTML":



  • Posts are HTML formatted. Put <p> </p> tags around your paragraphs. Put <code> </code> tags around your code and data!
  • Titles consisting of a single word are discouraged, and in most cases are disallowed outright.
  • Read Where should I post X? if you're not absolutely sure you're posting in the right place.
  • Please read these before you post! —
  • Posts may use any of the Perl Monks Approved HTML tags:
    a, abbr, b, big, blockquote, br, caption, center, col, colgroup, dd, del, details, div, dl, dt, em, font, h1, h2, h3, h4, h5, h6, hr, i, ins, li, ol, p, pre, readmore, small, span, spoiler, strike, strong, sub, summary, sup, table, tbody, td, tfoot, th, thead, tr, tt, u, ul, wbr
  • You may need to use entities for some characters, as follows. (Exception: Within code tags, you can put the characters literally.)
            For:     Use:
    & &amp;
    < &lt;
    > &gt;
    [ &#91;
    ] &#93;
  • Link using PerlMonks shortcuts! What shortcuts can I use for linking?
  • See Writeup Formatting Tips and other pages linked from there for more info.