It looks like a interest quest, :), though I do not know Template::Toolkit, I see following solution:
1/ Xmlize your input data. You can rewrite your C code to output XML rather then HTML.
2/ Prepare XML metadata files, which defines, which parts of your data have to be dressed on which clothes (clothes are other XML metadata)
3/ Prepare relatively generic XSLT stylesheet, which supports that processing (both XML data and metadata as input, HTML as output)
4/ Write the perl script to do these transformations
I think that sometimes it is better to write more code than learn some powerfull but huge tools...
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