I would very much like to see the first error that the CPAN shell gets - the errors you quote aren't useful. (They basically boil down to "something went wrong earlier").

That being said, your manual compilation attempt won't succeed because the first argument to perl isn't a perl script. Re-order your arguments and put Makefile.PL at the front:

~/.cpan/build/Tree-Suffix-0.12$ perl Makefile.PL CFLAGS="$CFLAGS -I$HO +ME/MyBioTool/libstree-0.4.2/include" LDFLAGS="$LDFLAGS -L$HOME/MyBioT +ool/libstree-0.4.2/lib"
followed by the command make and, only if the previous command was successful, make test and then (again, only if make test was successful) make install.
--
@/=map{[/./g]}qw/.h_nJ Xapou cets krht ele_ r_ra/; map{y/X_/\n /;print}map{pop@$_}@/for@/

In reply to Re: Installing Perl Wrapper Module for a C Library (Tree::Suffix) Locally by fizbin
in thread Installing Perl Wrapper Module for a C Library (Tree::Suffix) Locally by monkfan

Title:
Use:  <p> text here (a paragraph) </p>
and:  <code> code here </code>
to format your post, it's "PerlMonks-approved HTML":



  • Posts are HTML formatted. Put <p> </p> tags around your paragraphs. Put <code> </code> tags around your code and data!
  • Titles consisting of a single word are discouraged, and in most cases are disallowed outright.
  • Read Where should I post X? if you're not absolutely sure you're posting in the right place.
  • Please read these before you post! —
  • Posts may use any of the Perl Monks Approved HTML tags:
    a, abbr, b, big, blockquote, br, caption, center, col, colgroup, dd, del, details, div, dl, dt, em, font, h1, h2, h3, h4, h5, h6, hr, i, ins, li, ol, p, pre, readmore, small, span, spoiler, strike, strong, sub, summary, sup, table, tbody, td, tfoot, th, thead, tr, tt, u, ul, wbr
  • You may need to use entities for some characters, as follows. (Exception: Within code tags, you can put the characters literally.)
            For:     Use:
    & &amp;
    < &lt;
    > &gt;
    [ &#91;
    ] &#93;
  • Link using PerlMonks shortcuts! What shortcuts can I use for linking?
  • See Writeup Formatting Tips and other pages linked from there for more info.