While I haven't been able to turn up any docs for Algorithm::Cluster, I have found some information about the underlying C clustering library by Michiel Jan Laurens de Hoon, that may be useful to you:
The C Clustering Library
Making and Using DNA Microarrays - This is the manual for Cluster 3.0
HTH,
In reply to Re: Making sense of data: Clustering OR A coding challenge
by planetscape
in thread Making sense of data: Clustering OR A coding challenge
by belg4mit
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