It looks like
CGI uses your current directory as the directory for temporary files, likely because it can't find any other directory it can use. See the source of that module, the sub find_tempdir, how it tries to find a directory.
Why? No idea. Maybe it's because you're running your script under taint mode.
Anyway, take a look at this line in CGI.pm:
# HARD-CODED LOCATION FOR FILE UPLOAD TEMPORARY FILES.
# UNCOMMENT THIS ONLY IF YOU KNOW WHAT YOU'RE DOING.
# $CGITempFile::TMPDIRECTORY = '/usr/tmp';
That would certainly fix it.
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