What I would think of, is find a way to do a structure dump of the databases to text files, the way MySQL can do it, and then compare them with a standard diff. That'll focus on the differences.
I've hunted around a little, and it seems to me this guy has written a tool to dump the database structure for MS-SQL databases.
In reply to Re: Automated detection of different tables with same name
by bart
in thread Automated detection of different tables with same name
by Win
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