If i undertand your update correctly.....
Im actually looking at several of these keys: 213118_at, 456218_at, 279548_at. Each of these will be in the format:
Affy:HG_U133A:ID_HERE:74:303;
With the obvious replacement of the middle id (key) value. The data in this format will again "probably" have a similar situation where multiple ids (values) as in my original example. Im after the id value that occurs most frequently, e.g ENSG00000123623. This has to be stored with the original key so I then know which key corresponds to the most abundant value. Im not at all interested in keeping the less frequent values, so these can be just dropped.
A bit of a mouthful I know, but its the way my head works.
MonkPaul.
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