Im not convinced that what you are doing is the correct way to your goal (which I am unsure exactly what that is).
I would have code handle all arguments via initial command line, then branch out depending on what needed to be done. If you needed to call a new module or script, do it via code, not via the command line.
Here is my crappy (super duper crappy wappy) possibility to your probable goal :
use strict;
my $a_a_switch_param;
my $a_b_switch_param;
my $c_b_switch_param;
my $b_a_switch_param;
my $b_b_switch_param;
for (my $argcnt=0;$argcnt<=$#ARGV;$argcnt++) {
my $arg=$ARGV[$argcnt];
if($arg eq "-a") {
$argcnt++;
$a_a_switch_param=$ARGV[$argcnt];
}elsif($arg eq "-b") {
$argcnt++;
$a_b_switch_param=$ARGV[$argcnt];
}elsif($arg eq "-c") {
$argcnt++;
$a_c_switch_param=$ARGV[$argcnt];
}elsif($arg eq "-ba") {
$argcnt++;
$b_a_switch_param=$ARGV[$argcnt];
}elsif($arg eq "-bb") {
$argcnt++;
$b_b_switch_param=$ARGV[$argcnt];
}
}
my $b_prog_output=qx/perl b.pl $b_a_switch_param $b_b_switch_param/;
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