With FastCGI, perl and the FastCGI child process dies. There is no meaningful difference between that and an apache/mod_perl process dying. In both cases, the current request is ruined, another process is spawned, and things continue.
With a security problem, you do not "get" apache if you compromise a mod_perl script. You have no access to anything else in the server but your current process, and certainly no access to the parent process. What matters is what you can do to the system itself, which is determined by what user you run as, and this is the same for FastCGI.
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