That was my first thought, too (well, almost - I thought of DBM::Deep because I played with that one before).
I would have suggested a db if the OP didn't clearly state "Without using a DB..." :-) It also depends on how this data is being used/processed, though. If this is a one-time filtering step then loading it all into a db, filtering, and exporting again could be very inefficient. OTOH, if this is just one of many steps that require searching though the data, a db could be better.
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