You can redirect STDERR to STDOUT using the shell.
my $cvs_cmd = "cvs rlog -r$OLD::$NEW -SN $module";
my $cvs_pid = open my $cvs_pipe, '-|', "$cvs_cmd 2>&1"
or die "Can't read pipe: $!";
Then read from $cvs_pipe like any other file handle. The STDERR output will be mixed in with the STDOUT output.
I hear IPC::Run is good for this kind of thing, but I've never used it.
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