I would interpret
&%2339; as a failed attempt to encode the apostrophe character, as follows:
-
apostrophe (' = 0x27) is 39 decimal, so ' is the (decimal) numeric character entity for that
-
pound (# = 0x23) gets converted to %23, yielding &%2339;
Since the result of step 2 is an invalid entity reference, either step 2 should not have been done (leaving ' as-is), or the remaining ampersand should have been converted as well, to yield %26%2339; (update: or perhaps it should have been rendered as &%2339;)
The whole mess could have been avoided if the original apostrophe had been converted to %27, though I'm not sure from your description whether this would actually work either...
Another update: As for actually dealing with that, maybe you want to "pre-condition" the text before passing it to XML::TreeBuilder -- e.g. if you have the whole xml string in a scalar called "$text", you could do this:
$text =~ s/\%([0-9A-F]{2})/chr(hex($1))/eg;
(or be more particular/ad-hoc, and just do
s/\%23/\#/g;) Then pass $text to Treebuilder. That might put things right.
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