Hmm... I don't think you can nest character classes. your final regex looks something like:
/[^[\x30-39]|[\x41-\x59]|[\x61-\x7a]| ... #etc
Which means you're using the literal
[, - | and
] characters as part of a bigger character class.
Also, it looks like you're trying to match raw byte sequences instead of characters. I have zero experience with shift-jis so I have no clue what characters (if any) you're trying to match, but as a wild stab, I would assume it's a lot easier to use Encode's decode() function to translate the shift-jis bytes into true (utf-8) characters and then match on characters (since you then can match multi-byte codepoints directly).
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