if (m/^###|^\s*$/s) {
should be:
if (m/^###|^\s*\$/s) {
You need to quote $ because it's the "end of line" match meta character.
It would help to diagnose such problems if you tested your subsequent match and print a diagnostic if it fails:
unless (m{(^SIP\/2\.0 \d\d\d|^[A-Z]{3,6} ).*(Call-ID: [\S]{25,80})
+[^ ]+: .*}s) {
print "No match: $_\n";
next;
}
DWIM is Perl's answer to Gödel
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