I am not sure what the solution to your specific problem is,
but you should consider the following:
There is at least 1 typo in your posted code.
use CGI needs a semicolon.
Using the strictures can help prevent other simple mistakes:
use warnings;
use strict;
This will force you to declare all yor variables using
my, which will be well worth the effort and time.
The following line looks odd:
@line = pop(@line);
pop actually modifies the array.
The following line also looks odd:
$inum = ++$inum;
++$inum may be sufficient.
Declaring a sub in the middle of your main code
is a little confusing.
Your sub indexArray, while it may earn you a low Perl golf score, should probably not be so compact. It would benefit greatly by some added whitespace.
I hope this helps.
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