I fixed my issue. With a simple modification 
    my ( $refToArrA, $refToArrB, $refToArrC ) = makeArrays();
    $counter++;
    &gener( $refToArrA, $refToArrB, $refToArrC );
...
sub gener
{
    my ( $refToArrA, $refToArrB, $refToArrC ) = @_;
    my @newind = @$refToArrA;
    my @newchroma = @$refToArrB;
    my @newchromb = @$refToArrC;
    for my $pop ( 1 .. $popCt )
    {
        $HoH{$counter} =
           {
               individual  => [ @newind ],
               chromasome1 => [ @newchroma ],
               chromasome2 => [ @newchromb ],
           };
    }
}

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In reply to Re^6: Hash of Hash Redux by BioNrd
in thread Hash of Hash Redux by BioNrd

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