if ($temp =~ /#/){
$temp =~ s/#$'//;
}
That's what's causing the problem: $' can contain arbitrary data, but you try to treat it as a regex.
The "good" solution is to use this regex instead:
$temp =~ s/#.*$//;
In general you can also quote interpolated variables, then they are treated as text, not as regexes:
my $varaible = '[a-z]';
m/\Q$variable\E/ # matches literal [a-z], not a character class.
If you're not inside a regex, quotemeta does the same job.
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