I guess a s/\r\n/\n/g followed by chomp would do it
That substitution is exactly what the crlf PerlIO layer is
doing (on input). The layer is by default in effect when you're on
Windows (which is why you don't have the problem with Windows' files on Windows :)
In other words, you could also do
open($fh, "<:crlf", "foo.txt") or die "failed to open 'foo.txt':$!";
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