You did evaluate the blast modules on CPAN, right? I'm guessing that one or more of those would already be able to parse the blast records into something you can use easily in perl to generate whatever you need. I'm sure it'd require some major restructuring of your code, but it'd also remove a large portion of the code making it easier to read, follow, and understand six months from now.

In reply to Re: Find the first occurance and if not found print the first line by Tanktalus
in thread Find the first occurance and if not found print the first line by sm2004

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