Yes, that's what happening, the instructions aren't being carried out sequentially. It is a multi-core system, but why does this matter? If I run a c program it runs as a single thread, it seems to have something to do with how perl is running the script.
I don't know if it will be much help, but here's the explicit code fragment that fails:
bjmsys("xspec - ${tmp}.xcm", $v);
open(DAT, "${tmp}xsfit.dat") || die ("Could not open file!");
my @kT=<DAT>;
close DAT;
It dies when it tries to open the file because it hasn't been created yet.
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