Hi all,

I am trying to parse the following data for gap(-) counts and their positions:

KPHVNVGTIGHVDHGKTTL-------AISHVLAKTYGGEAKDFSQ--------IDNAP  
KPVLNVAFIGHVDAGKSTTVGRLLLDSGTIDPQIIERLKREASEKGKAGFEFAYVMDGLK

[download]
I am using 
$qgapstart= $-[0]; 

$qgapend= $+[0];

[download]
to catch the positions of the /-+/.

My Question is :it reads only TL-------AAI and skips FSQ--------IDN occuring in the same line.

How do i do recursive search for a pattern withinn the same line.

Please help me.
Thanks in advance,

In reply to Regex Help by Anonymous Monk

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