(for the record - I am maintainer of Tcl module, but you should use tcltk at perl dot org mailing list for problems using the module)
unfortunately the logic of Makefile.PL is twisted - I was always against making it complicated
but it grows by adding more and more include paths from different $^O variants.
You can use --include=/your/path/to/tcl/include-files to specify those, but even better is to --usestubs on linux, because this portion of makefile.pl is not broken. So try following command line:
perl Makefile.PL --usestubs
I guess this Makefile.PL needs serious cleaning upon next release.
HTH,
Vadim.
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