Hi,
I am having trouble with this:
each select statement executed will fetch multiple records with same tax_id(see below) value.
I want to catch only single of 'em.
some how it not getting in to elsif($count==1) loop.
I am unable to figure out why?
please let me know,
my $refseq_list ="/home/bla/bla/refseq.txt";
open(REF,$refseq_list);
my($ref,@ref,$size,$command1);
while($ref=<REF>)
{
push(@ref,$ref);
}
$size = @ref;
print "$size sequences found\n";
my $count=0;
LOOP:foreach $ref(@ref)
{
print "in foreach loop\n";
$count=0;
$command1 = qq{select tax_id from gene2acc where genomic_ac_ver= '$r
+ef'; };
$sth1=$dbh->prepare($command1);
$sth1->execute() or die $sth1->errstr;
my($tax_id);
$sth1->bind_columns(undef,\$tax_id );
while($array=$sth1->fetchrow_array())
{
$count++;
if($sth1->rows == 0)
{
print "No records matched for $ref\nn";
}
elsif($count==1)
{
$t=$array;
print "Entering taxID_format with $t\n";
#&taxID_format($t);
}
}
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