Looks to me like all the sections except the first one look the same, right? Why do you repeat the code then? Use a loop: 

for my $id (1..11) {
  if($cytokine[2*$id+1]=~/\S+/ and exists $ING{$cytokine[2*$id+1]}) {
    print OUT "$cytokine[2*$id]\t$cytokine[2*$id+1]\tY\t";
  } elsif ($cytokine[2*$id+1] =~ /\d+/) {
    print OUT "$cytokine[2*$id]\t$cytokine[2*$id+1]\tN\t";
  } else {
    print OUT "$cytokine[2*$id]\t$cytokine[2*$id+1]\t\t";
  }
}

[download]
Also please do be consistent with the code formatting.

This aside ... I do not understand when do you want to print the counts. Line #921 doesn't mean anything to me. Do you want to pring it after you process all the lines from CytokineArrays.txt? Or earlier? And if so, when?

Jenda
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In reply to Re: Print function by Jenda
in thread Print function by de2425

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