Whoops, thanks for pointing that out.

Update: Well, like others have pointed out, it was indeed a leak in the module I was using. I decided roll my own subroutine and my memory growth problems are solved. To my surprise I'm still hitting my Protein/second target! I'm back to loving Perl.

Thanks for all the help!

In reply to Re^2: Memory Growth Problem by Robgunn
in thread Memory Growth Problem by Robgunn

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