Where will the file names come from? Will you provide a file containing the names? Do you want to process all the files in a given directory? Do you want to hard wire the list of names in the Perl script? For the moment lets assume you have resolved that issue and have an array @filenames that contains the names of the files to process. You could then:

for my $filename (@filenames) {
    open my $dsspIn, '<', $filename or die "Unable to open $filename: 
+$!\n";

    #Create a new DSSP object
    my $dssp_obj = Bio::Structure::SecStr::DSSP::Res->new ('-file'=> $
+dsspIn);
    ...
    close $dsspIn;
}

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Perl reduces RSI - it saves typing

In reply to Re: Confused when reading Input within Perl and Shell Scripts by GrandFather
in thread Confused when reading Input within Perl and Shell Scripts by InfoSeeker

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