Can't reproduce it, though I'm also using Linux and bash. With your sample code I'm getting something like:
$ ./724323.pl &
[2] 10620
(no further output)
$ ps x | grep 724323
10620 pts/1 T 0:00 /usr/bin/perl ./724323.pl
(the 'T' indicates that the script has been stopped)
$ fg
./724323.pl
# Start script
-> Waiting 2 seconds
-> Waiting 2 seconds
# Exiting ..
(after foregrounding it, output continues normally)
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