OK, so you've got 65 lines of code.

You seem like a bright chap. Please do go read: How do I post a question effectively? and Markup in the Monastery, and come back with a question that a programmer can understand. Look at it this way, just as Perl is a semi-foreign language to you, DNA sequences are a semi-foreign language to most Perl programmers.

Also, you don't have to start a new thread each time. You can "comment on" or "reply to" existing postings, even your own.

For all I know there's an interesting combinatorial problem in the middle of all this... but you have to present it in a way that identifies that. FWIW: one thing that programmers are good at is rules. If you can describe the rules that govern what you want to do, in terms of sequences of letters (not biology terms of art), I'm sure progress can be made.

In reply to Re: my best attempt for Orf subsequences by gone2015
in thread Orf subsequences by odegbon

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