Hi modified the program but it is still giving some errors :(
#!/usr/bin/perl use strict; use warnings; use Data::Dumper; my $qfn1 = "File1.txt"; my $qfn2 = "File2.txt"; my %positions; { open(my $fh, '<', $qfn1) or die("Cannot open file \"$qfn1\": $!\n"); while ( <$fh> ) { chomp; my ( $key, $pos ) = split /\s+/; push @{ $positions{$key} }, $pos; } } print Data::Dumper->Dumpxs( [ \ %positions ], [ qw{ *positions } ] ); my %sequences; { open(my $fh, '<', $qfn2) or die("Cannot open file \"$qfn2\": $!\n"); my $key; while (<$fh>) { if ( s/^>// ) { $key = ( split /\|/ )[1]; } else { chomp; $sequences{$key} .= $_; } } } for my $key (sort keys %positions) { for my $key (keys %{$positions{$key}}) { foreach my $value (@) { if (! exists( $sequences{$key} )) { warn "KEY $key in File1 not found in File2\n"; next; } if ( length( $sequences{$key} ) < $positions{$key} ) { warn "KEY $key: File2 string length too short for File1 positi +on value\n"; next; } my $index = rindex( $sequences{$key}, "ATG", $positions{$key} ); if ( $index < 0 ) { warn sprintf( "KEY %s: No ATG in File2 string prior to positio +n %d\n", $key, $positions{$key} ); next; } $index += 3 while ( ($index + 3) < $positions{$key} ); print "$key $positions{$key} " . substr($sequences{$key}, $index, +3) . "\n"; } } }

In reply to Re^3: Hashs of hash (multiple value) key problem. by ashnator
in thread Hashs of hash (multiple value) key problem. by ashnator

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