Use preprocess to tell find what order to process each directory in (untested): 
find( {
        preprocess => sub { sort { $a <=> $b || $a cmp $b } @_ },
        wanted => sub { next if /^\.+$/...}
    },
    $dir
);

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In reply to Re: using File::Find for reading files in order by ysth
in thread using File::Find for reading files in order by Ashes.cfg

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