this is correct... so instead of 3 hits, it should be 1. final result should look like : 
1190    31277    A > T    1    0    0    -
1190    31607    C > A    0    3    1    -
1190    31629    C > T    0    2    0    -
1190    31789    A > G    1    2    5    zm1829427
1190    31882    A > C    0    4    0    -
1190    31883    T > A    0    4    0    -
1190    31883    T > C    2    2    5    -
1190    32199    C > T    0    1    1    -
1190    32487    T > C    0    1    1    -
1190    32496    A > G    0    3    0    -

Total number of Hits: 1

[download]
sorry for the confusion in between :(

In reply to Re^2: duplicates getting omitted while comparing values inside foreach. by patric
in thread duplicates getting omitted while comparing values inside foreach. by patric

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