Hi lostjimmy!
First, the logic was to find the file by that name. You may be correct about the logic
because I already have the file info passed in.

Second, the $contig1_out is used as the output file for clustalw. The aln file is what I want to insert into the db.

I will try your suggestion.
Thanks!

In reply to Re^2: Trouble getting the file contents from return values by lomSpace
in thread Trouble getting the file contents from return values by lomSpace

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