If you wanted to keep that part in R, you could use the R to perl bridge RSPerl http://www.omegahat.org/RSPerl/

I have used it before to do kernel density estimations and it works quite well

In reply to Re: Egenvalues/Eigenvectors for Non-Symmetric Arrays? by tmaly
in thread Egenvalues/Eigenvectors for Non-Symmetric Arrays? by ack

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